We recommend adding all of your custom javascript into a separate file and importing it when your app is being run as a desktop app. Here's how to do this:
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<scripttype="module">
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if(window.todesktop){
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import('some-module.mjs');
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}
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</script>
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Because your desktop app will always be running a very recent version of Chromium, you can rely on the latest browser features being present when your app is running as a desktop app.